Occurrence record: CCBROA:BRU0003

Specimen of Bacteria recorded on 4/4/2015

API

Dataset

Data resource	Base de dados da coleção de Cultura de Bactérias Resistentes de Origem Alimentar da UNIRIO
institutionCode	Universidade Federal do Estado do Rio de Janeiro Supplied institution code "Universidade Federal do Estado do Rio de Janeiro (UNIRIO)"
collectionCode	Coleção de Cultura de Bactérias do Lacomen - CCBL Supplied collection code "CCBROA"
catalogNumber	BRU0003
occurrenceID	Br:UNIRIO:Bacteria:BRU003
basisOfRecord	Preserved specimen
preparations	DNA extract
Collector	Pires, B.A. Supplied as "Pires, B. A."
recordNumber	BRU01
individualCount	1
License	CC-BY 4.0 (Int) Supplied as http://creativecommons.org/licenses/by/4.0/legalcode
disposition	in collection
Rightsholder	Universidade Federal do Estado do Rio de Janeiro (UNIRIO)
datasetName	Coleção de Cultura de Bactérias Resistentes de Origem Alimentar (CCBROA) do Laboratório de Controle Microbiológico de Alimentos da Escola de Nutrição (LACOMEN) da Universidade Federal do Estado do Rio de Janeiro (UNIRIO)
language	en
occurrenceStatus	present
institutionID	CNPJ 34.023.077/0001-07
Abcd identification qualifier	Not provided
identificationRemarks	Phenotypic Resistance:ampicillin, cefoxitin, amoxicillin-clavulanic acid. Genotypic Resistance: tem

Event

identificationRemarks	Phenotypic Resistance:ampicillin, cefoxitin, amoxicillin-clavulanic acid. Genotypic Resistance: tem
Occurrence date	[date not supplied] Supplied date "4/4/2015"
Date precision	Not Supplied
eventTime	9:00

Taxonomy

scientificName	Bacteria
taxonRank	kingdom Supplied as "species"
Kingdom	Bacteria
Family	Enterobacteriaceae
Genus	Escherichia
Species	Escherichia coli
Taxonomic issue	No issues
Name match metric	Higher taxon match The match is based on the higher level classification.
Name parse type	SCIENTIFIC

Geospatial

Country	Brazil
State or Territory	Rio de Janeiro
habitat	Supplied as "cheese"
continent	South America
county	Rio de Janeiro
countryCode	BR

Additional properties

User flagged issues

Data quality tests

Test name	Result
Invalid collection date	Failed
Incomplete collection date	Warning
Occurrence status assumed to be present	Warning
Name not in national checklists	Warning
Show/Hide 14 passed properties
Basis of record not supplied	Passed
Basis of record badly formed	Passed
Collector name unparseable	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Collection code not recognised	Passed
Institution code not recognised	Passed
Missing taxonomic rank	Passed
Kingdom not recognised	Passed
Name not recognised	Passed
Invalid scientific name	Passed
Country inferred from coordinates	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Show/Hide 13 missing properties
Missing an identification qualifier	Missing
Missing name of person who identified the specimen/observation	Missing
Missing identification references	Missing
Missing identification date	Missing
Name not supplied	Missing
Decimal coordinates not supplied	Missing
Location not supplied	Missing
Missing geodetic datum	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 55 tests that have not been run
Coordinates dont match supplied state	Unchecked (lack of data)
Habitat incorrect for species	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
No collection date supplied	Unchecked (lack of data)
Type status not recognised	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
First of the century	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Coordinates are transposed	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
Supplied coordinates are zero	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Cultivated / escapee	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Zero longitude	Unchecked (lack of data)
First of the month	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Altitude out of range	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
Resource taxonomic scope mismatch	Unchecked (lack of data)
Coordinates derived from verbatim coordinates	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Precision / range mismatch	Unchecked (lack of data)
Coordinate uncertainty not specified	Unchecked (lack of data)
Missing coordinate precision	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
Supplied country not recognised	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Geodetic datum assumed WGS84	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Coordinate precision not valid	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Unparseable verbatim coordinates	Unchecked (lack of data)
Zero latitude	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Coordinates are out of range for species	Unchecked (lack of data)
Coordinate uncertainty not valid	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)
Identification date before occurrence date	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Name match metric		higherMatch
	scientificName		Bacteria
	taxonConceptID		395708
	Kingdom id		395708
	Left		566353
	kingdom	Bacteria	Bacteria
	genus	Escherichia
	taxonRank	species	kingdom
	specificEpithet	coli
	Taxonomic issue		["noIssue"]
	family	Enterobacteriaceae
	Taxon rank id		1000
	Right		568063
Event	Date precision		Not Supplied
	eventDate	4/4/2015
	eventTime	9:00
Identification	Abcd identification qualifier		Not provided
	identificationQualifier		Not provided
	identificationRemarks	Phenotypic Resistance:ampicillin, cefoxitin, amoxicillin-clavulanic acid. Genotypic Resistance: tem
Occurrence	occurrenceID	Br:UNIRIO:Bacteria:BRU003
	disposition	in collection
	basisOfRecord	PreservedSpecimen	PreservedSpecimen
	recordedBy	Pires, B. A.	Pires, B.A.
	modified	3/16/2018
	Rightsholder	Universidade Federal do Estado do Rio de Janeiro (UNIRIO)
	individualCount	1
	datasetName	Coleção de Cultura de Bactérias Resistentes de Origem Alimentar (CCBROA) do Laboratório de Controle Microbiológico de Alimentos da Escola de Nutrição (LACOMEN) da Universidade Federal do Estado do Rio de Janeiro (UNIRIO)
	language	en
	recordNumber	BRU01
	institutionCode	Universidade Federal do Estado do Rio de Janeiro (UNIRIO)
	occurrenceStatus		present
	preparations	DNA extract
	catalogNumber	BRU0003
	institutionID	CNPJ 34.023.077/0001-07
	collectionCode	CCBROA
Attribution	Collection uid		co239
	Data resource		Base de dados da coleção de Cultura de Bactérias Resistentes de Origem Alimentar da UNIRIO
	Institution uid		in116
	Collection name		Coleção de Cultura de Bactérias do Lacomen - CCBL
	Institution name		Universidade Federal do Estado do Rio de Janeiro
	license	http://creativecommons.org/licenses/by/4.0/legalcode	CC-BY 4.0 (Int)
	Data resource uid	dr468
Location	country	Brazil	Brazil
	continent	South America
	county	Rio de Janeiro
	habitat	cheese
	stateProvince	Rio de Janeiro
	countryCode	BR

Occurrence record: CCBROA:BRU0003

Dataset

Event

Taxonomy

Geospatial

Additional properties

User flagged issues

Data quality tests

- flagged by