Occurrence record: CYP:CYP 0812

LivingSpecimen of Bacteria

API

Dataset

Data partner	Fundação Oswaldo Cruz
Data resource	Fiocruz/CYP - Coleção de Yersinia pestis
institutionCode	Fundação Oswaldo Cruz Supplied institution code "Fundação Oswaldo Cruz (Fiocruz)"
collectionCode	Coleção de Yersinia pestis Supplied collection code "CYP"
catalogNumber	CYP 0812
occurrenceID	BR:Fiocruz:CYP:0812
basisOfRecord	Living specimen
recordNumber	P.Exu 812
License	CC-BY-NC
Rightsholder	Coleção de Yersinia pestis (CYP)
occurrenceStatus	present
Abcd identification qualifier	Not provided

Event

Date precision	Not Supplied

Taxonomy

scientificName	Bacteria Supplied scientific name "Yersinia pestis"
taxonRank	kingdom Supplied as "species"
Kingdom	Bacteria Supplied as "Bactéria"
Phylum	Proteobacteria
class	Gammaproteobacteria
Order	Enterobacteriales
Family	Enterobacteriaceae
Genus	Yersinia
Species	Yersinia pestis
Taxonomic issue	No issues
Name match metric	Higher taxon match The match is based on the higher level classification.
Name parse type	SCIENTIFIC

Geospatial

Country	Brasil
State or Territory	Pernambuco
locality	SÃtio BoqueirÃ£o
county	Triunfo

User flagged issues

Data quality tests

Test name	Result
Invalid collection date	Failed
Kingdom not recognised	Failed
Incomplete collection date	Warning
Occurrence status assumed to be present	Warning
Name not in national checklists	Warning
Show/Hide 14 passed properties
Basis of record not supplied	Passed
Basis of record badly formed	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Collection code not recognised	Passed
Institution code not recognised	Passed
Missing taxonomic rank	Passed
Name not supplied	Passed
Name not recognised	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Country inferred from coordinates	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Show/Hide 12 missing properties
No collection date supplied	Missing
Missing an identification qualifier	Missing
Missing name of person who identified the specimen/observation	Missing
Missing identification references	Missing
Missing identification date	Missing
Decimal coordinates not supplied	Missing
Missing geodetic datum	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 55 tests that have not been run
Coordinates dont match supplied state	Unchecked (lack of data)
Habitat incorrect for species	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
Unparseable verbatim coordinates	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Collector name unparseable	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)
Coordinates derived from verbatim coordinates	Unchecked (lack of data)
Coordinates are out of range for species	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Geodetic datum assumed WGS84	Unchecked (lack of data)
Zero longitude	Unchecked (lack of data)
Coordinates are transposed	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
First of the month	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Altitude out of range	Unchecked (lack of data)
Identification date before occurrence date	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Coordinate uncertainty not specified	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Coordinate precision not valid	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
Zero latitude	Unchecked (lack of data)
Resource taxonomic scope mismatch	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Supplied country not recognised	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
First of the century	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
Cultivated / escapee	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
Type status not recognised	Unchecked (lack of data)
Coordinate uncertainty not valid	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Precision / range mismatch	Unchecked (lack of data)
Missing coordinate precision	Unchecked (lack of data)
Supplied coordinates are zero	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Name match metric		higherMatch
	scientificName	Yersinia pestis	Bacteria
	class	Gammaproteobacteria
	taxonConceptID		395708
	Kingdom id		395708
	Left		566353
	phylum	Proteobacteria
	kingdom	Bactéria	Bacteria
	genus	Yersinia
	order	Enterobacteriales
	taxonRank	species	kingdom
	specificEpithet	pestis
	Taxonomic issue		["noIssue"]
	family	Enterobacteriaceae
	Taxon rank id		1000
	Right		568063
Event	Date precision		Not Supplied
Identification	Abcd identification qualifier		Not provided
Identification	identificationQualifier		Not provided
Occurrence	occurrenceID	BR:Fiocruz:CYP:0812
	basisOfRecord	LivingSpecimen	LivingSpecimen
	modified	2022-09-23	2022-09-23
	Rightsholder	Coleção de Yersinia pestis (CYP)
	recordNumber	P.Exu 812
	institutionCode	Fundação Oswaldo Cruz (Fiocruz)
	occurrenceStatus		present
	catalogNumber	CYP 0812
	collectionCode	CYP
Attribution	Collection uid		co53
	Data resource		Fiocruz/CYP - Coleção de Yersinia pestis
	Institution uid		in4
	Collection name		Coleção de Yersinia pestis
	Data provider uid		dp4
	Institution name		Fundação Oswaldo Cruz
	license		CC-BY-NC
	Provenance		Published dataset
	Data resource uid	dr704
	Data partner		Fundação Oswaldo Cruz
Location	country	Brasil	Brasil
	county	Triunfo
	stateProvince	Pernambuco
	locality	SÃtio BoqueirÃ£o

Occurrence record: CYP:CYP 0812

Dataset

Event

Taxonomy

Geospatial

User flagged issues

Data quality tests

- flagged by