Occurrence record: COLTRYP:COLTRYP 00604

LivingSpecimen of Trypanosoma janseni recorded on 2015-03-21

API

Dataset

Data partner	Fundação Oswaldo Cruz
Data resource	Fiocruz/COLTRYP - Coleção de Trypanosoma de Mamíferos Silvestres, Domésticos e Vetores
institutionCode	Fundação Oswaldo Cruz Supplied institution code "Fundação Oswaldo Cruz (Fiocruz)"
collectionCode	Coleção de Trypanosoma de Mamíferos Silvestres, Domésticos e Vetores Supplied collection code "COLTRYP"
catalogNumber	COLTRYP 00604
occurrenceID	BR:Fiocruz:COLTRYP:00604
basisOfRecord	Living specimen
preparations	Criopreservação em Nitrogênio Líquido -196ºC
identifiedBy	Maria Augusta Dario
Identified date	2021-05-20
Collector	Maria Augusta Dario
recordNumber	LBCE 17248
License	CC-BY-NC
Rightsholder	Coleção de Trypanosoma de Mamíferos Silvestres, Domésticos e Vetores (COLTRYP)
samplingProtocol	Hemocultura
associatedTaxa	Gambá de orelha preta
dynamicProperties	Nível de Biossegurança 2
occurrenceRemarks	Nível de Biossegurança 2
occurrenceStatus	present
Abcd identification qualifier	Not provided
dateIdentified	2021-05-20

Event

Occurrence date	2015-03-21 Supplied as year:2015 month:03 day:21
samplingProtocol	Hemocultura
Date precision	Day

Taxonomy

scientificName	Trypanosoma janseni
taxonRank	species
Kingdom	Protozoário
Family	Trypanosomatidae
Genus	Trypanosoma
Species	Trypanosoma janseni
associatedTaxa	Gambá de orelha preta
Taxonomic issue	No issues
Name match metric	No match
Name parse type	SCIENTIFIC

Geospatial

Country	Brasil
State or Territory	Rio de Janeiro
locality	Bairro Fazenda Batatal - Mata Atlântica
decimalLatitude	-22.946306
decimalLongitude	-44.142223
geodeticDatum	EPSG:4326 Supplied datum: "WGS84"
county	Mangaratiba
verbatimLongitude	-44.14222200
verbatimLatitude	-22.94630600

User flagged issues

Data quality tests

Test name	Result
Kingdom not recognised	Failed
Name not recognised	Failed
Occurrence status assumed to be present	Warning
Coordinates derived from verbatim coordinates	Warning
Show/Hide 29 passed properties
Basis of record not supplied	Passed
Basis of record badly formed	Passed
Invalid collection date	Passed
Incomplete collection date	Passed
Identification date before occurrence date	Passed
First of the month	Passed
Missing name of person who identified the specimen/observation	Passed
Missing identification date	Passed
Collector name unparseable	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Collection code not recognised	Passed
Institution code not recognised	Passed
Missing taxonomic rank	Passed
Name not supplied	Passed
Invalid scientific name	Passed
Unparseable verbatim coordinates	Passed
Coordinates are transposed	Passed
Coordinates are out of range for species	Passed
Supplied coordinates are zero	Passed
Zero latitude	Passed
Zero longitude	Passed
Supplied country not recognised	Passed
Location not supplied	Passed
Country inferred from coordinates	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Missing geodetic datum	Passed
Coordinates dont match supplied state	Passed
Show/Hide 10 missing properties
Missing an identification qualifier	Missing
Missing identification references	Missing
Decimal coordinates not supplied	Missing
Missing coordinate precision	Missing
Coordinate uncertainty not specified	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 43 tests that have not been run
Habitat incorrect for species	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Precision / range mismatch	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Resource taxonomic scope mismatch	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
Type status not recognised	Unchecked (lack of data)
Coordinate uncertainty not valid	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Cultivated / escapee	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)
Geodetic datum assumed WGS84	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
No collection date supplied	Unchecked (lack of data)
Name not in national checklists	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
Coordinate precision not valid	Unchecked (lack of data)
First of the century	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)
Altitude out of range	Unchecked (lack of data)

Additional political boundaries information

JBRJ \| Distribuição potencial da espécie Actinostemon lasiocarpus	nao ocorre
ANA \| Bacias hidrográficas do Brasil	ATLANTICO, TRECHO LESTE
ANA \| Divisão Hidrográfica Nacional - Macro Região Hidrográfica	ATLANTICO SUDESTE
ANA \| Divisão Hidrográfica Nacional - Meso Região Hidrográfica	Litoral do Rio de Janeiro
ANA \| Divisão Hidrográfica Nacional - Micro Região Hidrográfica	Guandu (RJ)
DNAEE \| Sub-bacias Hidrográficas	Litoraneas do Rio de Janeiro
IBGE \| Biomas do Brasil (2022)	Mata Atlantica
IBGE \| Domínios morfoestruturais do Brasil (2021)	Cinturoes Moveis Neoproterozoicos
IBGE \| Estados do Brasil	Rio de Janeiro
IBGE \| Folhas da Carta Internacional do Mundo, ao Milionésimo (IBGE)	Rio de Janeiro
IBGE \| Folhas da Carta Internacional do Mundo, ao Milionésimo (IBGE)	Rio de Janeiro
IBGE \| Limite do Bioma Mata Atlântica (2022)	Mata Atlantica
IBGE \| Limite do Brasil	1
IBGE \| Municípios do Brasil (2022)	Mangaratiba
IBGE \| Pedologia do Brasil (2021)	CAMBISSOLO
IBGE \| Regiões Fitoecológicas do Brasil (2021)	Floresta Ombrofila Densa Submontana
IBGE \| Regiões do Brasil	Sudeste
ICMBio \| Unidades de Conservação Estaduais de Uso Sustentável	AREA DE PROTECAO AMBIENTAL DE MANGARATIBA
ICMBio \| Unidades de Conservação Federais (2023)	AREA DE PROTECAO AMBIENTAL DE MANGARATIBA
JBRJ \| Distribuição potencial da espécie Abarema brachystachya	ocorre
JBRJ \| Distribuição potencial da espécie Abarema filamentosa (Benth.) PittierAlbers	nao ocorre
JBRJ \| Distribuição potencial da espécie Aegiphila graveolens	ocorre
JBRJ \| Distribuição potencial da espécie Acnistus arborescens	ocorre
JBRJ \| Distribuição potencial da espécie Acosmium lentiscifolium Schott	ocorre
JBRJ \| Distribuição potencial da espécie Acrocomia intumescens Drude	nao ocorre
Municípios do Brasil	MANGARATIBA
WWF \| Ecorregiões de Água Doce (2008)	330
WWF \| Ecorregiões marinhas mundiais (2007)	Southeastern Brazil
WWF \| Ecorregiões terrestres mundiais (2001)	Serra do Mar coastal forests

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Name match metric		noMatch
	scientificName	Trypanosoma janseni
	kingdom	Protozoário
	genus	Trypanosoma
	taxonRank	species
	specificEpithet	janseni
	Taxonomic issue		["noIssue"]
	family	Trypanosomatidae
Event	Date precision		Day
	eventDate		2015-03-21
	year	2015	2015
	day	21	21
	month	03	03
Identification	Abcd identification qualifier		Not provided
	dateIdentified	2021-05-20	2021-05-20
	identificationQualifier		Not provided
	identifiedBy	Maria Augusta Dario
Occurrence	occurrenceID	BR:Fiocruz:COLTRYP:00604
	basisOfRecord	LivingSpecimen	LivingSpecimen
	recordedBy	Maria Augusta Dario	Maria Augusta Dario
	modified	2022-09-23	2022-09-23
	Rightsholder	Coleção de Trypanosoma de Mamíferos Silvestres, Domésticos e Vetores (COLTRYP)
	samplingProtocol	Hemocultura
	associatedTaxa	Gambá de orelha preta
	recordNumber	LBCE 17248
	institutionCode	Fundação Oswaldo Cruz (Fiocruz)
	dynamicProperties	<div>Nível de Biossegurança 2</div><div></div><div><br /></div>
	occurrenceRemarks	<div>Nível de Biossegurança 2</div><div></div><div><br /></div>
	occurrenceStatus		present
	preparations	Criopreservação em Nitrogênio Líquido -196ºC
	catalogNumber	COLTRYP 00604
	collectionCode	COLTRYP
Attribution	Collection uid		co51
	Data resource		Fiocruz/COLTRYP - Coleção de Trypanosoma de Mamíferos Silvestres, Domésticos e Vetores
	Institution uid		in4
	Collection name		Coleção de Trypanosoma de Mamíferos Silvestres, Domésticos e Vetores
	Data provider uid		dp4
	Institution name		Fundação Oswaldo Cruz
	license		CC-BY-NC
	Provenance		Published dataset
	Data resource uid	dr700
	Data partner		Fundação Oswaldo Cruz
Location	decimalLatitude		-22.946306
	country	Brasil	Brasil
	county	Mangaratiba
	stateProvince	Rio de Janeiro	Rio de Janeiro
	decimalLongitude		-44.142223
	locality	Bairro Fazenda Batatal - Mata Atlântica
	geodeticDatum	WGS84	EPSG:4326
	verbatimLongitude	-44.14222200
	verbatimLatitude	-22.94630600

Occurrence record: COLTRYP:COLTRYP 00604

Dataset

Event

Taxonomy

Geospatial

User flagged issues

Data quality tests

Additional political boundaries information

- flagged by