Occurrence record: COLPROT:COLPROT 0679

LivingSpecimen of Crithidia expoeki recorded on 2008-01-01

API

Dataset

Data partner	Fundação Oswaldo Cruz
Data resource	Fiocruz/COLPROT - Coleção de Protozoários
institutionCode	Fundação Oswaldo Cruz Supplied institution code "Fundação Oswaldo Cruz (Fiocruz)"
collectionCode	Coleção de Protozoários Supplied collection code "COLPROT"
catalogNumber	COLPROT 0679
otherCatalogNumbers	BJ08.175
occurrenceID	BR:Fiocruz:COLPROT:0679
basisOfRecord	Living specimen
preparations	Criopreservação (10%glicerol no volume total)
identifiedBy	Regula Schmid-Hempel
Identified date	2010-01-01
Collector	Schmid-Hempel, R. Regula Supplied as "Regula Schmid-Hempel"
typeStatus	Tipo
License	CC-BY-NC
Rightsholder	Coleção de Protozoários (COLPROT)
samplingProtocol	As fezes (amostras do Alaska) foram coletadas por micro-capilares (Kit), as amostras de fezes infectadas (amostras do Switzerland) foram analisadas e vizualizadas por microscopio, respectivamente as células foram saparadas por cell sorting (FACS) e iniciado o processo para o clone (Salathé et al. unpubl. observ.). Logo após foi feito a análise gênica das amostras por PCR, utilizando os seguintes primer: RNA (SSU rRNA), gGAPDH, cytochrome b(cyt b) and the complete internal transcribed spacer region 1 (ITS1).
associatedTaxa	Gut and feces of B. lucorum L. (Hymenoptera, Apidae). Other hosts include Bombus ﬂavifrons, B. lapidarius, B. pratorum, Bombus terricola, B. terrestris.
occurrenceStatus	present
Abcd identification qualifier	Not provided
dateIdentified	2010-01-01

Event

Occurrence date	2008-01-01 Supplied as year:2008 month:01 day:01
samplingProtocol	As fezes (amostras do Alaska) foram coletadas por micro-capilares (Kit), as amostras de fezes infectadas (amostras do Switzerland) foram analisadas e vizualizadas por microscopio, respectivamente as células foram saparadas por cell sorting (FACS) e iniciado o processo para o clone (Salathé et al. unpubl. observ.). Logo após foi feito a análise gênica das amostras por PCR, utilizando os seguintes primer: RNA (SSU rRNA), gGAPDH, cytochrome b(cyt b) and the complete internal transcribed spacer region 1 (ITS1).
Date precision	Day

Taxonomy

scientificName	Crithidia expoeki
taxonRank	species
Kingdom	Protozoário
class	Kinetoplastea
Order	Trypanosomatida
Family	Trypanosomatidae
Genus	Crithidia
Species	Crithidia expoeki
associatedTaxa	Gut and feces of B. lucorum L. (Hymenoptera, Apidae). Other hosts include Bombus ﬂavifrons, B. lapidarius, B. pratorum, Bombus terricola, B. terrestris.
Taxonomic issue	No issues
Name match metric	No match
Name parse type	SCIENTIFIC

Geospatial

Country	Suíça
locality	Roschenz, Switzerland (47o2513011N, 71o27' 18''E)

User flagged issues

Data quality tests

Test name	Result
Kingdom not recognised	Failed
Name not recognised	Failed
Type status not recognised	Failed
First of the month	Warning
First of the year	Warning
Occurrence status assumed to be present	Warning
Show/Hide 20 passed properties
Basis of record not supplied	Passed
Basis of record badly formed	Passed
Invalid collection date	Passed
Incomplete collection date	Passed
Identification date before occurrence date	Passed
First of the century	Passed
Missing name of person who identified the specimen/observation	Passed
Missing identification date	Passed
Collector name unparseable	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Collection code not recognised	Passed
Institution code not recognised	Passed
Missing taxonomic rank	Passed
Name not supplied	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Country inferred from coordinates	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Show/Hide 9 missing properties
Missing an identification qualifier	Missing
Missing identification references	Missing
Decimal coordinates not supplied	Missing
Missing geodetic datum	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 51 tests that have not been run
Coordinates dont match supplied state	Unchecked (lack of data)
Habitat incorrect for species	Unchecked (lack of data)
Precision / range mismatch	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Unparseable verbatim coordinates	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Missing coordinate precision	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Zero latitude	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Coordinate uncertainty not valid	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Altitude out of range	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Zero longitude	Unchecked (lack of data)
Supplied country not recognised	Unchecked (lack of data)
Coordinates are out of range for species	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
No collection date supplied	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
Coordinates are transposed	Unchecked (lack of data)
Coordinate uncertainty not specified	Unchecked (lack of data)
Coordinate precision not valid	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
Resource taxonomic scope mismatch	Unchecked (lack of data)
Supplied coordinates are zero	Unchecked (lack of data)
Name not in national checklists	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Coordinates derived from verbatim coordinates	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Cultivated / escapee	Unchecked (lack of data)
Geodetic datum assumed WGS84	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Name match metric		noMatch
	scientificName	Crithidia expoeki
	class	Kinetoplastea
	kingdom	Protozoário
	genus	Crithidia
	order	Trypanosomatida
	taxonRank	species
	specificEpithet	expoeki
	Taxonomic issue		["noIssue"]
	family	Trypanosomatidae
Event	Date precision		Day
	eventDate		2008-01-01
	year	2008	2008
	day	01	1
	month	01	01
Identification	Abcd identification qualifier		Not provided
	dateIdentified	2010-01-01	2010-01-01
	identificationQualifier		Not provided
	typeStatus	Tipo
	identifiedBy	Regula Schmid-Hempel
Occurrence	occurrenceID	BR:Fiocruz:COLPROT:0679
	basisOfRecord	LivingSpecimen	LivingSpecimen
	recordedBy	Regula Schmid-Hempel	Schmid-Hempel, R. Regula
	modified	2022-09-23	2022-09-23
	Rightsholder	Coleção de Protozoários (COLPROT)
	samplingProtocol	As fezes (amostras do Alaska) foram coletadas por micro-capilares (Kit), as amostras de fezes infectadas (amostras do Switzerland) foram analisadas e vizualizadas por microscopio, respectivamente as células foram saparadas por cell sorting (FACS) e iniciado o processo para o clone (Salathé et al. unpubl. observ.). Logo após foi feito a análise gênica das amostras por PCR, utilizando os seguintes primer: RNA (SSU rRNA), gGAPDH, cytochrome b(cyt b) and the complete internal transcribed spacer region 1 (ITS1).<br /><br />
	associatedTaxa	Gut and feces of B. lucorum L. (Hymenoptera, Apidae). Other hosts include Bombus ﬂavifrons, B. lapidarius, B. pratorum, Bombus terricola, B. terrestris.
	otherCatalogNumbers	BJ08.175
	institutionCode	Fundação Oswaldo Cruz (Fiocruz)
	occurrenceStatus		present
	preparations	Criopreservação (10%glicerol no volume total)
	catalogNumber	COLPROT 0679
	collectionCode	COLPROT
Attribution	Collection uid		co46
	Data resource		Fiocruz/COLPROT - Coleção de Protozoários
	Institution uid		in4
	Collection name		Coleção de Protozoários
	Data provider uid		dp4
	Institution name		Fundação Oswaldo Cruz
	license		CC-BY-NC
	Provenance		Published dataset
	Data resource uid	dr702
	Data partner		Fundação Oswaldo Cruz
Location	country	Suíça
Location	locality	<p>Roschenz, Switzerland (47o2513011N, 71o27' 18''E)</p>

Occurrence record: COLPROT:COLPROT 0679

Dataset

Event

Taxonomy

Geospatial

User flagged issues

Data quality tests

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