Occurrence record: CLIOC:IOCL 3516

LivingSpecimen of Euglenozoa recorded on 2013-11-08

API

Dataset

Data partner	Fundação Oswaldo Cruz
Data resource	Fiocruz/CLIOC - Coleção de Leishmania
institutionCode	Fundação Oswaldo Cruz Supplied institution code "Fundação Oswaldo Cruz (Fiocruz)"
collectionCode	Coleção de Leishmania Supplied collection code "CLIOC"
catalogNumber	IOCL 3516
occurrenceID	BR:Fiocruz:IOCL:3516
basisOfRecord	Living specimen
preparations	[DOC:POP-LRNTL-024]
identifiedBy	Elisa Cupolillo
Identified date	2014-03-07
Collector	Jorge Augusto de Oliveira Guerra - 133
recordNumber	63DDL
License	CC-BY-NC
Rightsholder	Coleção de Leishmania (CLIOC)
samplingProtocol	Cultivo de fragmento de lesão
associatedTaxa	Homem
occurrenceStatus	present
Abcd identification qualifier	Not provided
dateIdentified	2014-03-07

Event

Occurrence date	2013-11-08 Supplied as year:2013 month:11 day:08
samplingProtocol	Cultivo de fragmento de lesão
Date precision	Day

Taxonomy

scientificName	Euglenozoa Supplied scientific name "Leishmania (Viannia) naiffi"
taxonRank	phylum Supplied as "species"
Kingdom	Protozoa Supplied as "Protozoário"
Phylum	Euglenozoa
class	Kinetoplastea
Order	Trypanosomatida
Family	Trypanosomatidae
Genus	Leishmania
Species	Leishmania naiffi
associatedTaxa	Homem
Taxonomic issue	No issues
Name match metric	Higher taxon match The match is based on the higher level classification.
Name parse type	SCIENTIFIC
subgenus	Viannia

Geospatial

Country	Brasil
State or Territory	Amazonas
decimalLatitude	-3.1019444
decimalLongitude	-60.025
geodeticDatum	EPSG:4326
county	Manaus
verbatimLongitude	-60.02500000
verbatimLatitude	-3.10194444

User flagged issues

Data quality tests

Test name	Result
Kingdom not recognised	Failed
Collector name unparseable	Warning
Occurrence status assumed to be present	Warning
Name not in national checklists	Warning
Coordinates derived from verbatim coordinates	Warning
Show/Hide 29 passed properties
Basis of record not supplied	Passed
Basis of record badly formed	Passed
Invalid collection date	Passed
Incomplete collection date	Passed
Identification date before occurrence date	Passed
First of the month	Passed
Missing name of person who identified the specimen/observation	Passed
Missing identification date	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Collection code not recognised	Passed
Institution code not recognised	Passed
Missing taxonomic rank	Passed
Name not supplied	Passed
Name not recognised	Passed
Invalid scientific name	Passed
Unparseable verbatim coordinates	Passed
Coordinates are transposed	Passed
Coordinates are out of range for species	Passed
Supplied coordinates are zero	Passed
Zero latitude	Passed
Zero longitude	Passed
Supplied country not recognised	Passed
Location not supplied	Passed
Country inferred from coordinates	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Missing geodetic datum	Passed
Coordinates dont match supplied state	Passed
Show/Hide 10 missing properties
Missing an identification qualifier	Missing
Missing identification references	Missing
Decimal coordinates not supplied	Missing
Missing coordinate precision	Missing
Coordinate uncertainty not specified	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 42 tests that have not been run
Habitat incorrect for species	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)
Resource taxonomic scope mismatch	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Type status not recognised	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
Precision / range mismatch	Unchecked (lack of data)
Cultivated / escapee	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
Coordinate uncertainty not valid	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Geodetic datum assumed WGS84	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
First of the century	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Altitude out of range	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
No collection date supplied	Unchecked (lack of data)
Coordinate precision not valid	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)

Additional political boundaries information

ANA \| Bacias hidrográficas do Brasil	RIO AMAZONAS
ANA \| Divisão Hidrográfica Nacional - Macro Região Hidrográfica	AMAZONICA
ANA \| Divisão Hidrográfica Nacional - Meso Região Hidrográfica	Negro
ANA \| Divisão Hidrográfica Nacional - Micro Região Hidrográfica	Baixo Negro
DNAEE \| Sub-bacias Hidrográficas	Negro
IBGE \| Biomas do Brasil (2022)	Amazonia
IBGE \| Domínios morfoestruturais do Brasil (2021)	Bacias e Coberturas Sedimentares Fanerozoicas
IBGE \| Estados do Brasil	Amazonas
IBGE \| Folhas da Carta Internacional do Mundo, ao Milionésimo (IBGE)	Amazonas
IBGE \| Folhas da Carta Internacional do Mundo, ao Milionésimo (IBGE)	Amazonas
IBGE \| Limite da Amazônia Legal (2020)	1
IBGE \| Limite do Bioma Amazônia (2022)	Amazonia
IBGE \| Limite do Brasil	1
IBGE \| Municípios do Brasil (2022)	Manaus
IBGE \| Pedologia do Brasil (2021)	AREA URBANA
IBGE \| Regiões do Brasil	Norte
Municípios do Brasil	MANAUS
WWF \| Ecorregiões de Água Doce (2008)	314
WWF \| Ecorregiões terrestres mundiais (2001)	Japura-Solimoes-Negro moist forests

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Name match metric		higherMatch
	scientificName	Leishmania (Viannia) naiffi	Euglenozoa
	class	Kinetoplastea
	taxonConceptID		395723
	Kingdom id		395722
	Left		568066
	phylum	Euglenozoa	Euglenozoa
	kingdom	Protozoário	Protozoa
	genus	Leishmania
	Phylum id		395723
	order	Trypanosomatida
	taxonRank	species	phylum
	specificEpithet	naiffi
	Taxonomic issue		["noIssue"]
	subgenus	Viannia
	family	Trypanosomatidae
	Taxon rank id		2000
	Right		568066
Event	Date precision		Day
	eventDate		2013-11-08
	year	2013	2013
	day	08	8
	month	11	11
Identification	Abcd identification qualifier		Not provided
	dateIdentified	2014-03-07	2014-03-07
	identificationQualifier		Not provided
	identifiedBy	Elisa Cupolillo
Occurrence	occurrenceID	BR:Fiocruz:IOCL:3516
	basisOfRecord	LivingSpecimen	LivingSpecimen
	recordedBy	Jorge Augusto de Oliveira Guerra - 133
	modified	2022-09-23	2022-09-23
	Rightsholder	Coleção de Leishmania (CLIOC)
	samplingProtocol	<p>Cultivo de fragmento de lesão</p>
	associatedTaxa	Homem
	recordNumber	63DDL
	institutionCode	Fundação Oswaldo Cruz (Fiocruz)
	occurrenceStatus		present
	preparations	[DOC:POP-LRNTL-024]
	catalogNumber	IOCL 3516
	collectionCode	CLIOC
Attribution	Collection uid		co42
	Data resource		Fiocruz/CLIOC - Coleção de Leishmania
	Institution uid		in4
	Collection name		Coleção de Leishmania
	Data provider uid		dp4
	Institution name		Fundação Oswaldo Cruz
	license		CC-BY-NC
	Provenance		Published dataset
	Data resource uid	dr706
	Data partner		Fundação Oswaldo Cruz
Location	decimalLatitude		-3.1019444
	country	Brasil	Brasil
	county	Manaus
	stateProvince	Amazonas	Amazonas
	decimalLongitude		-60.025
	geodeticDatum		EPSG:4326
	verbatimLongitude	-60.02500000
	verbatimLatitude	-3.10194444

Occurrence record: CLIOC:IOCL 3516

Dataset

Event

Taxonomy

Geospatial

User flagged issues

Data quality tests

Additional political boundaries information

- flagged by