Occurrence record: GBIF repatriados | Centro Internacional de Agricultura Tropical - CIAT | CC BY 4.0 License - 3308737

of Oryza rufipogon

API

Dataset

Data partner	Dados repatriados Portal GBIF - ocorrência no Brasil
Data resource	GBIF repatriados \| Centro Internacional de Agricultura Tropical - CIAT \| CC BY 4.0 License
institutionCode	Supplied institution code "USDA_NPGS_GRIN"
catalogNumber	3308737
occurrenceID	b884e7a3-0e7c-4333-9720-dbe0a4f18779
basisOfRecord	OCCURRENCE
recordNumber	GSOR 311702
License	CC-BY 4.0 (Int) Supplied as CC_BY_4_0
establishmentMeans	native Supplied as Native
occurrenceRemarks	. Coordinates do not match to country in source data. Not found a country in reverser geocoding. Core Accession from PI 346371. The Core Collection containing about 10% of the whole NSGC Rice Collection was assembled by stratified random sampling method in 2002, evaluated comprehensively for 25 characteristics and proven to be highly representative of the whole collection. Information drawn from the Core Collection can effectively be used to assess the whole collection with 88% certainty. A single plant was selected from each Core accession in 2006 and bulk seed from the single plant selection produced in 2007 is deposited in the GSOR. DNA extracted from the selected plant has been analyzed with one indel marker and 71 SSR (Single Sequence Repeat) markers that cover the entire rice genome about 30 cM apart. A Mini-Core Collection containing about 10% of the Core Collection has been developed and fingerprinted with 155 SSR markers, averaging one marker every 10 cM in the genome. Because the Core and Mini-Core were developed from single-plant selections from the NSGC accessions which may be phenotypically variable, there is the possibility that the GSOR seed sources are not exactly the same as the NSGC sources.. U.S. Department of Agriculture
occurrenceStatus	present Supplied as PRESENT
institutionID	USA126
Abcd identification qualifier	Not provided

Event

Date precision	Not Supplied

Taxonomy

scientificName	Oryza rufipogon Supplied scientific name "Oryza rufipogon Griff."
taxonRank	species
Kingdom	Plantae
Phylum	Tracheophyta
class	Liliopsida
Order	Poales
Family	Poaceae
Genus	Oryza
Species	Oryza rufipogon
Taxonomic issue	No issues
Name match metric	Exact match The supplied name matched the name exactly.
Name parse type	SCIENTIFIC
taxonomicStatus	ACCEPTED

Geospatial

Country	Brasil
State or Territory	Amazonas Supplied as: "Manaos"
decimalLatitude	-3.133333
decimalLongitude	-60.016667
geodeticDatum	EPSG:4326
coordinatePrecision	Unknown
continent	SOUTH_AMERICA
georeferenceRemarks	original
countryCode	BR

Additional properties

accepted scientific name	Oryza rufipogon Griff.
accepted taxon key	2703463
class key	196
dataset key	07044577-bd82-4089-9f3a-f4a9d2170b2e
family key	3073
gbif id	1304816495
generic name	Oryza
genus key	2703455
has coordinate	true
has geospatial issues	false
iucn red list category	LC
kingdom key	6
last crawled	2023-01-07T13:27:25.877Z
last interpreted	2023-06-07T13:52:07.921Z
last parsed	2023-06-07T13:52:07.921Z
level0gid	BRA
level0name	Brazil
level1gid	BRA.4_1
level1name	Amazonas
level2gid	BRA.4.38_2
level2name	Manaus
order key	1369
phylum key	7707728
protocol	EML
publishing country	CO
repatriated	true
species key	2703463
taxon key	2703463
verbatim scientific name	Oryza rufipogon

User flagged issues

Data quality tests

Test name	Result
Basis of record badly formed	Failed
Invalid collection date	Failed
Incomplete collection date	Warning
Name not in national checklists	Warning
Geodetic datum assumed WGS84	Warning
Country inferred from coordinates	Warning
Show/Hide 20 passed properties
Basis of record not supplied	Passed
Cultivated / escapee	Passed
Missing catalogue number	Passed
Data are generalised	Passed
Missing taxonomic rank	Passed
Name not supplied	Passed
Kingdom not recognised	Passed
Name not recognised	Passed
Invalid scientific name	Passed
Decimal coordinates not supplied	Passed
Coordinates are transposed	Passed
Coordinates are out of range for species	Passed
Supplied coordinates are zero	Passed
Zero latitude	Passed
Zero longitude	Passed
Location not supplied	Passed
Supplied coordinates centre of state	Passed
Coordinates centre of country	Passed
Missing geodetic datum	Passed
Coordinates dont match supplied state	Passed
Show/Hide 12 missing properties
No collection date supplied	Missing
Missing an identification qualifier	Missing
Missing name of person who identified the specimen/observation	Missing
Missing identification references	Missing
Missing identification date	Missing
Missing coordinate precision	Missing
Coordinate uncertainty not specified	Missing
Missing name of person who georeferenced the occurrence	Missing
Missing georeferenced protocol	Missing
Missing georeferenced sources	Missing
Missing georeferenced verification status	Missing
Missing georeference date	Missing
Show/Hide 48 tests that have not been run
Habitat incorrect for species	Unchecked (lack of data)
Altitude out of range	Unchecked (lack of data)
Depth out of range	Unchecked (lack of data)
Resource taxonomic scope mismatch	Unchecked (lack of data)
Collection code not recognised	Unchecked (lack of data)
Unparseable verbatim coordinates	Unchecked (lack of data)
Day and month transposed	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Precision / range mismatch	Unchecked (lack of data)
Higher taxonomy missing	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Coordinates converted to WGS84	Unchecked (lack of data)
Date precision invalid	Unchecked (lack of data)
Georeferenced after occurrence date	Unchecked (lack of data)
Type status not recognised	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Coordinate precision and uncertainty transposed	Unchecked (lack of data)
Homonym issues with supplied name	Unchecked (lack of data)
Institution code not recognised	Unchecked (lack of data)
Badly formed altitude	Unchecked (lack of data)
Coordinate precision not valid	Unchecked (lack of data)
Invalid geodetic datum	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Decimal latitude/longitude conversion failed	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
Longitude is negated	Unchecked (lack of data)
Supplied country not recognised	Unchecked (lack of data)
Collector name unparseable	Unchecked (lack of data)
unrecognisedOccurrenceStatus	Unchecked (lack of data)
Coordinates derived from verbatim coordinates	Unchecked (lack of data)
Image URL invalid	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
First of the century	Unchecked (lack of data)
Possible duplicate record	Unchecked (lack of data)
Latitude Longitude calculated from grid reference	Unchecked (lack of data)
Occurrence status assumed to be present	Unchecked (lack of data)
Unrecognized geodetic datum	Unchecked (lack of data)
Identification date before occurrence date	Unchecked (lack of data)
Media unrepresentative	Unchecked (lack of data)
Coordinates dont match supplied country	Unchecked (lack of data)
Unable to convert UTM coordinates	Unchecked (lack of data)
Media unrepresentative for taxon	Unchecked (lack of data)
Latitude is negated	Unchecked (lack of data)
First of the month	Unchecked (lack of data)
Outside expert range for species	Unchecked (lack of data)
Coordinate uncertainty not valid	Unchecked (lack of data)
Coordinates converted from UTM	Unchecked (lack of data)

Additional political boundaries information

ANA \| Bacias hidrográficas do Brasil	RIO AMAZONAS
ANA \| Divisão Hidrográfica Nacional - Macro Região Hidrográfica	AMAZONICA
ANA \| Divisão Hidrográfica Nacional - Meso Região Hidrográfica	Negro
ANA \| Divisão Hidrográfica Nacional - Micro Região Hidrográfica	Baixo Negro
DNAEE \| Sub-bacias Hidrográficas	Negro
IBGE \| Biomas do Brasil (2022)	Amazonia
IBGE \| Domínios morfoestruturais do Brasil (2021)	Bacias e Coberturas Sedimentares Fanerozoicas
IBGE \| Estados do Brasil	Amazonas
IBGE \| Folhas da Carta Internacional do Mundo, ao Milionésimo (IBGE)	Amazonas
IBGE \| Folhas da Carta Internacional do Mundo, ao Milionésimo (IBGE)	Amazonas
IBGE \| Limite da Amazônia Legal (2020)	1
IBGE \| Limite do Bioma Amazônia (2022)	Amazonia
IBGE \| Limite do Brasil	1
IBGE \| Municípios do Brasil (2022)	Manaus
IBGE \| Pedologia do Brasil (2021)	AREA URBANA
IBGE \| Regiões do Brasil	Norte
Municípios do Brasil	MANAUS
WWF \| Ecorregiões de Água Doce (2008)	314
WWF \| Ecorregiões terrestres mundiais (2001)	Japura-Solimoes-Negro moist forests

Group	Field Name	Original Value	Processed Value
Classification	Name parse type		SCIENTIFIC
	Species	Oryza rufipogon	Oryza rufipogon
	Name match metric		exactMatch
	scientificName	Oryza rufipogon Griff.	Oryza rufipogon
	class	Liliopsida	Liliopsida
	Genus id		295051
	taxonConceptID		295393
	Kingdom id		395630
	Left		189258
	phylum	Tracheophyta	Tracheophyta
	kingdom	Plantae	Plantae
	Class id		395637
	genus	Oryza	Oryza
	Phylum id		395631
	order	Poales	Poales
	taxonRank	SPECIES	species
	specificEpithet	rufipogon
	Order id		395684
	Taxonomic issue		["noIssue"]
	Species id		295393
	Family id		364592
	taxonomicStatus	ACCEPTED
	family	Poaceae	Poaceae
	Taxon rank id		7000
	Right		189258
Event	Date precision		Not Supplied
Identification	Abcd identification qualifier		Not provided
Identification	identificationQualifier		Not provided
Occurrence	occurrenceID	b884e7a3-0e7c-4333-9720-dbe0a4f18779
	basisOfRecord	OCCURRENCE
	modified	2016-02-27T18:26:36Z	2016-02-27
	recordNumber	GSOR 311702
	establishmentMeans	Native	native
	institutionCode	USDA_NPGS_GRIN
	occurrenceRemarks	. Coordinates do not match to country in source data. Not found a country in reverser geocoding. Core Accession from PI 346371. The Core Collection containing about 10% of the whole NSGC Rice Collection was assembled by stratified random sampling method in 2002, evaluated comprehensively for 25 characteristics and proven to be highly representative of the whole collection. Information drawn from the Core Collection can effectively be used to assess the whole collection with 88% certainty. A single plant was selected from each Core accession in 2006 and bulk seed from the single plant selection produced in 2007 is deposited in the GSOR. DNA extracted from the selected plant has been analyzed with one indel marker and 71 SSR (Single Sequence Repeat) markers that cover the entire rice genome about 30 cM apart. A Mini-Core Collection containing about 10% of the Core Collection has been developed and fingerprinted with 155 SSR markers, averaging one marker every 10 cM in the genome. <p>Because the Core and Mini-Core were developed from single-plant selections from the NSGC accessions which may be phenotypically variable, there is the possibility that the GSOR seed sources are not exactly the same as the NSGC sources.. U.S. Department of Agriculture
	occurrenceStatus	PRESENT	present
	catalogNumber	3308737
	institutionID	USA126
Attribution	Data resource		GBIF repatriados \| Centro Internacional de Agricultura Tropical - CIAT \| CC BY 4.0 License
	Data provider uid		dp10
	license	CC_BY_4_0	CC-BY 4.0 (Int)
	Data resource uid	dr953
	Data partner		Dados repatriados Portal GBIF - ocorrência no Brasil
Location	decimalLatitude	-3.133333	-3.133333
	country		Brasil
	continent	SOUTH_AMERICA
	stateProvince	Manaos	Amazonas
	decimalLongitude	-60.016667	-60.016667
	georeferenceRemarks	original	original
	geodeticDatum		EPSG:4326
	countryCode	BR

Occurrence record: GBIF repatriados | Centro Internacional de Agricultura Tropical - CIAT | CC BY 4.0 License - 3308737

Dataset

Event

Taxonomy

Geospatial

Additional properties

User flagged issues

Data quality tests

Additional political boundaries information

- flagged by